Chapter 2 CBW Workshop example R Notebooks

Do you want to run the pathways and network analysis from R instead of doing everything mannually as demonstrated in the workshop?

Everything (almost!) that was discussed in the lectures and practicals can be done computationally through R.

We are using the bookdown package (Xie 2024) in this Workshop R Notebooks book, which was built on top of R Markdown and knitr (Xie 2015).

References

Xie, Yihui. 2015. Dynamic Documents with R and Knitr. 2nd ed. Boca Raton, Florida: Chapman; Hall/CRC. http://yihui.name/knitr/.

———. 2024. Bookdown: Authoring Books and Technical Documents with r Markdown. https://github.com/rstudio/bookdown.